b46d372807d2ffc6fd3d03ec2ad71dd72a361672 kate Thu Apr 28 11:15:14 2016 -0700 Refactor GTEx boxplot code in preparation for moving to library for shared use with hgGene diff --git src/hg/lib/gtexInfo.c src/hg/lib/gtexInfo.c index 517e3d6..951c626 100644 --- src/hg/lib/gtexInfo.c +++ src/hg/lib/gtexInfo.c @@ -186,37 +186,42 @@ " #Indices\n" " PRIMARY KEY(version)\n" ")\n", table); sqlRemakeTable(conn, table, query); } char *gtexVersionSuffix(char *table) /* Return version string for a GTEx track table. For now, just supporting V4 and V6 (default, no suffix )*/ { if (endsWith(table, "V4")) return("V4"); return(""); } char *gtexVersion(char *table) -/* Return version string based on table suffix */ +/* Return version string based on table suffix. Default version tables have no suffix */ { char *suffix = gtexVersionSuffix(table); -// Currently the V4 tables have no suffix return (sameString(suffix, "")) ? GTEX_DEFAULT_VERSION : suffix; } +char *gtexVersionSuffixFromVersion(char *version) +/* Return version table suffix for a version */ +{ +return (sameString(version, GTEX_DEFAULT_VERSION)) ? "" : version; +} + double gtexMaxMedianScore(char *version) /* Retrieve max median score for latest (or named) version */ { char query[1024]; struct sqlConnection *conn = hAllocConn("hgFixed"); if (!conn) return 0; // TODO: trackDB setting for this if (!version || sameString(version, "")) version = GTEX_DEFAULT_VERSION; sqlSafef(query, sizeof query, "select maxMedianScore from gtexInfo where version='%s'", version); double score = sqlQuickDouble(conn, query); if (score == 0.0) errAbort("Internal error: GTEx version \"%s\" not found in gtexInfo table", version); hFreeConn(&conn);