Commits for angie

v333_preview to v333_preview2 (2016-05-09 to 2016-05-16) v333

282a4958b8e808f57ecea4c6e8dfb56054f4579c Tue May 10 10:08:26 2016 -0700

• initialDb logic assumed that the cart already had db, but when hgCustom is accessed from the main page with no cookies, there is no db in the cart; use empty string. Also make addCustomForm ignore empty err string so we don't need a special case for passing in err string vs NULL. refs #17295 fixes #16174
  
  • src/hg/hgCustom/hgCustom.c - lines changed 6, context: html, text, full: html, text

e80bfeb008dccf887c5e6d6c15b702050157b297 Tue May 10 14:10:43 2016 -0700

• Temporarily changing relative URLs to absolute http://genome.ucsc.edu/ URLs for v332 release. To be reverted...
  
  • src/hg/htdocs/inc/jWestFooter.html - lines changed 6, context: html, text, full: html, text

312123fe72695f041738fb3729961c31d5c9593e Wed May 11 10:19:13 2016 -0700

• When the hgtaIntersectTable is carried over from a SQL database, but we have switched to a track hub database, various is<Type> functions were calling sql-only hdb functions. Added support for track hub db to hTableExists(); check existence before trying to determine the type of some table.
  
  • src/hg/hgTables/intersect.c - lines changed 4, context: html, text, full: html, text
  • src/hg/lib/hdb.c - lines changed 14, context: html, text, full: html, text

5a68a854988fcfa8168650ff90f9ca26725e4bd1 Wed May 11 10:46:26 2016 -0700

• Added a missing NULL check for assembly hub description URL that was crashing hgGateway. fixes #17315 refs #17312.
  
  • src/hg/hgGateway/hgGateway.c - lines changed 1, context: html, text, full: html, text

bf6a59576de3f69c5e38ace2e86d9c85a3c307b4 Wed May 11 15:39:28 2016 -0700

• Undoing e80bfeb00 (absolute links to http://genome.ucsc.edu) -- as Matt suggested, use ../ relative links which takes care of hgGateway. When static pages start using inc/jWestFooter.html, we will need something like hgMenubar to adjust the links. refs #17307
  
  • src/hg/htdocs/inc/jWestFooter.html - lines changed 7, context: html, text, full: html, text

5615ffccc75fa3e3a6b1477b696c1488a407b865 Thu May 12 13:22:56 2016 -0700

• Check idx vs database -- temporary stopgap.
  
  • src/hg/lib/wikiLink.c - lines changed 12, context: html, text, full: html, text

bcaafef5db6eab27cf08b521cf23729b7aa08365 Thu May 12 16:05:15 2016 -0700

• Oops, blog link does need to be absolute.
  
  • src/hg/htdocs/inc/jWestFooter.html - lines changed 1, context: html, text, full: html, text

a240964d6dfdd6f8661487b64538d33518d88501 Mon May 16 09:38:09 2016 -0700

• Added checking of wiki.loggedInCookie (numeric user ID) using random numbers as suggested by Max
  if the new centralDb table gbMemberToken exists, otherwise checking the ID vs gbMembers.idx.
  refs #17327
  
  • src/hg/hgLogin/hgLogin.c - lines changed 5, context: html, text, full: html, text
  • src/hg/hgSession/hgSession.c - lines changed 51, context: html, text, full: html, text
  • src/hg/inc/wikiLink.h - lines changed 10, context: html, text, full: html, text
  • src/hg/lib/cart.c - lines changed 7, context: html, text, full: html, text
  • src/hg/lib/gbMemberToken.as - lines changed 7, context: html, text, full: html, text
  • src/hg/lib/gbMemberToken.sql - lines changed 13, context: html, text, full: html, text
  • src/hg/lib/wikiLink.c - lines changed 231, context: html, text, full: html, text

688f0de6d2a5b9875ac2cea897997e80a4a65e03 Mon May 16 10:25:55 2016 -0700

• MYLIBS were out of order, and for some reason that was never a problem until this morning when the build broke when trying to link pslCDnaFilter.
  
  • src/hg/pslCDnaFilter/makefile - lines changed 1, context: html, text, full: html, text