4e4629ec70e0b6635441790483d6d24bb30df91b braney Fri May 13 17:00:35 2016 -0700 first cut at long range interaction track diff --git src/hg/hgTracks/hgTracks.h src/hg/hgTracks/hgTracks.h index 8074707..3394187 100644 --- src/hg/hgTracks/hgTracks.h +++ src/hg/hgTracks/hgTracks.h @@ -943,30 +943,33 @@ void coverageMethods(struct track *tg); /* Make track for golden path positions of all frags. */ void cytoBandIdeoMethods(struct track *tg); /* Draw ideogram of chromosome. */ void cytoBandMethods(struct track *tg); /* Make track for simple repeats. */ #ifdef USE_HAL void halSnakeMethods(struct track *track, struct trackDb *tdb, int wordCount, char *words[]); /* Make track group for hal-based snake alignment. */ #endif +void connectMethods(struct track *track, struct trackDb *tdb); +/* Make track group for long range connections . */ + void snakeMethods(struct track *track, struct trackDb *tdb, int wordCount, char *words[]); /* Make track group for chain-based snake alignment. */ void chainMethods(struct track *track, struct trackDb *tdb, int wordCount, char *words[]); /* Make track group for chain alignment. */ void netMethods(struct track *tg); /* Make track group for chain/net alignment. */ void mafMethods(struct track *tg); /* Make track group for maf multiple alignment. */ void bamMethods(struct track *track);