3afb1ad18d251832c36c02910ba194a3996ab47a
braney
  Mon May 9 14:56:22 2016 -0700
some changes to bigPsl format

diff --git src/hg/lib/bigPsl.as src/hg/lib/bigPsl.as
index 5b5dfdf..ffd774f 100644
--- src/hg/lib/bigPsl.as
+++ src/hg/lib/bigPsl.as
@@ -10,23 +10,24 @@
     uint thickStart;    "Start of where display should be thick (start codon)"
     uint thickEnd;      "End of where display should be thick (stop codon)"
     uint reserved;       "RGB value (use R,G,B string in input file)"
     int blockCount;     "Number of blocks"
     int[blockCount] blockSizes; "Comma separated list of block sizes"
     int[blockCount] chromStarts; "Start positions relative to chromStart"
 
     uint    oChromStart;"Start position in other chromosome"
     uint    oChromEnd;  "End position in other chromosome"
     char[1] oStrand;    "+ or - for other strand"
     uint    oChromSize; "Size of other chromosome."
     int[blockCount] oChromStarts; "Start positions relative to oChromStart"
 
     lstring  oSequence;  "Sequence on other chrom (or edit list, or empty)"
     string   oCDS;       "CDS in NCBI format"
-    uint    oBlock;     "Block number on other sequence"
+
+    uint    chromSize;"Size of target chromosome"
 
     uint match;        "Number of bases matched."
     uint misMatch; " Number of bases that don't match "
     uint repMatch; " Number of bases that match but are part of repeats "
     uint nCount;   " Number of 'N' bases "
     )