61878cb225c4fafa3ba2d38af16330fbb57377ed
angie
Mon Jun 13 09:52:59 2016 -0700
Basic documentation of tableBrowser noGenome support in TB and DI. refs #4458
diff --git src/hg/hgTables/usage.c src/hg/hgTables/usage.c
index a00e625..b4deb6d 100644
--- src/hg/hgTables/usage.c
+++ src/hg/hgTables/usage.c
@@ -38,42 +38,47 @@
" \n"
"
assembly: Specifies which version of the organism's genome\n"
" sequence to use.\n"
" \n"
" group: Selects the type of tracks to be displayed in \n"
" the track list. The options correspond to the track groupings\n"
" shown in the Genome Browser. Select 'All Tracks' for an alphabetical list\n"
" of all available tracks in all groups. Select 'All Tables' to see all tables\n"
" including those not associated with a track.\n"
" \n"
" database: (with "All Tables" group option) Determines \n"
" which database should be used for options in table menu.\n"
" \n"
" track: Selects the annotation track data to work with. This \n"
" list displays all tracks belonging to the group specified in the \n"
-" group list. \n"
+" group list. \n"
+" Some tracks are not available when the region is set to genome \n"
+" due to the data provider's restrictions on sharing. \n"
" \n"
" table: Selects the SQL table data to use. This list shows \n"
" all tables associated with the track specified in the track \n"
-" list.\n"
+" list. \n"
+" Some tables may be unavailable due to the data provider's restrictions on sharing.\n"
" \n"
" describe table schema: Displays schema information for the \n"
" tables associated with the selected track.\n"
" \n"
" region: Restricts the query to a\n"
-" particular chromosome or region. Select genome to apply the \n"
-" query to the entire genome or ENCODE to examine only the \n"
+" particular chromosome or region.\n"
+" Select genome to apply the query to the entire genome \n"
+" (not available for certain tracks with restrictions on data sharing).\n"
+" In some Human assemblies, you may select ENCODE to examine only the \n"
" ENCODE Pilot regions.\n"
" To limit the query to a specific position, type a \n"
" chromosome name, e.g. chrX, or a chromosome coordinate \n"
" range, such as chrX:100000-200000, or a gene name or other id in \n"
" the text box.\n"
" You can select multiple genomic regions by clicking the "define regions" \n"
" button and entering up to 1,000 regions in a 3- or 4-field BED file \n"
" format.\n"
" \n"
" lookup: Press this button after typing in a gene name or \n"
" other id in the position text box to look up the chromosome position\n"
" \n"
" identifiers (selected tracks only): Restricts the \n"
" output to table data that match a list of identifiers, for\n"