61878cb225c4fafa3ba2d38af16330fbb57377ed angie Mon Jun 13 09:52:59 2016 -0700 Basic documentation of tableBrowser noGenome support in TB and DI. refs #4458 diff --git src/hg/hgTables/usage.c src/hg/hgTables/usage.c index a00e625..b4deb6d 100644 --- src/hg/hgTables/usage.c +++ src/hg/hgTables/usage.c @@ -38,42 +38,47 @@ " \n" " <LI><B>assembly: </B>Specifies which version of the organism's genome\n" " sequence to use.</LI>\n" " \n" " <LI><B>group: </B>Selects the type of tracks to be displayed in \n" " the <em>track</em> list. The options correspond to the track groupings\n" " shown in the Genome Browser. Select 'All Tracks' for an alphabetical list\n" " of all available tracks in all groups. Select 'All Tables' to see all tables\n" " including those not associated with a track.</LI>\n" " \n" " <LI><B>database: </B> (with "All Tables" group option) Determines \n" " which database should be used for options in table menu.</LI>\n" " \n" " <LI><B>track: </B>Selects the annotation track data to work with. This \n" " list displays all tracks belonging to the group specified in the \n" -" <em>group</em> list. </LI>\n" +" <em>group</em> list. \n" +" Some tracks are not available when the region is set to <em>genome</em> \n" +" due to the data provider's restrictions on sharing. </LI>\n" " \n" " <LI><B>table: </B>Selects the SQL table data to use. This list shows \n" " all tables associated with the track specified in the <em>track</em> \n" -" list.</LI>\n" +" list. \n" +" Some tables may be unavailable due to the data provider's restrictions on sharing.</LI>\n" " \n" " <LI><B>describe table schema: </B>Displays schema information for the \n" " tables associated with the selected track.</LI>\n" " \n" " <LI><B>region: </B>Restricts the query to a\n" -" particular chromosome or region. Select <em>genome</em> to apply the \n" -" query to the entire genome or <em>ENCODE</em> to examine only the \n" +" particular chromosome or region.\n" +" Select <em>genome</em> to apply the query to the entire genome \n" +" (not available for certain tracks with restrictions on data sharing).\n" +" In some Human assemblies, you may select <em>ENCODE</em> to examine only the \n" " ENCODE Pilot regions.\n" " To limit the query to a specific position, type a \n" " chromosome name, e.g. <em>chrX</em>, or a chromosome coordinate \n" " range, such as chrX:100000-200000, or a gene name or other id in \n" " the text box.\n" " You can select multiple genomic regions by clicking the "define regions" \n" " button and entering up to 1,000 regions in a 3- or 4-field <a \n" " href=\"../FAQ/FAQformat.html#format1\">BED</a> file \n" " format.</LI>\n" " \n" " <LI><B>lookup:</B> Press this button after typing in a gene name or \n" " other id in the position text box to look up the chromosome position\n" " \n" " <LI><B>identifiers</B> (selected tracks only)<B>: </B>Restricts the \n" " output to table data that match a list of identifiers, for\n"