c43bcc0e7251182c280ed8c1a1fdf592ccf827c4 angie Tue Apr 12 13:56:18 2016 -0700 New home page designed by Jim & others, using styles from the new gateway page design. refs #17470, #15277 diff --git src/hg/htdocs/index.html src/hg/htdocs/index.html index f773a0b..37b793f 100755 --- src/hg/htdocs/index.html +++ src/hg/htdocs/index.html @@ -1,102 +1,134 @@ -<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"> -<HTML> -<HEAD> - <META HTTP-EQUIV="Content-Type" CONTENT="text/html;CHARSET=iso-8859-1"> - <META name="description" content="UCSC Genome Browser"> - <META name="keywords" content="genome, genome browser, human genome, genome assembly, Blat, UCSC, bioinformatics, gene prediction, SNP, SNPs, EST, mRNA, mouse genome, rat genome, chicken genome, chimp genome, dog genome, fruitfly genome, zebrafish genome, xenopus, frog genome, rhesus, opossum, danio rerio genome, drosophila, fugu, yeast, ciona, comparative genomics, human variation, hapMap"> - <TITLE>UCSC Genome Browser Home</TITLE> - <LINK REL="STYLESHEET" HREF="style/HGStyle.css"> -<meta name="verify-v1" content="PCwOyGxw6+Ib1t4DtxiRLG45cL2xihRrRVgsqKtIP84="> -</HEAD> - -<BODY BGCOLOR="#FFF9D2" LINK="#0000CC" VLINK="#330066" ALINK="#6600FF"> -<A NAME="TOP"></A> - -<TABLE BORDER=0 CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> - <TR><TH COLSPAN=2 ALIGN="left"><IMG SRC="images/title.jpg" ALT="UCSC Genome Bioinformatics"></TH></TR> - -<TR><TD COLSPAN=2 HEIGHT=40><!--#include virtual="cgi-bin/hgMenubar"--></TD></TR> - -<!-- Left Sidebar Menu === --> - <TR style="height:100%; vertical-align:top"> - <TD ROWSPAN="3" VALIGN="top" HEIGHT="100%"> - <!-- outer table is to align leftbar & content boxes at top of page --> - <TABLE WIDTH="100%" BORDER=0 CELLPADDING=0 CELLSPACING=0> - <TR><TD><IMG SRC="images/DOT.gif" ALT="" HEIGHT="7"></TD></TR> - <TR style="height:100%"><TD style="height:100%"> - <!--outer table is for black border--> - <TABLE WIDTH="100%" BGCOLOR="#000000" BORDER="0" CELLSPACING="0" CELLPADDING="1"> - <TR><TD> - <TABLE WIDTH="100%" BORDER=0 CELLSPACING="0" CELLPADDING=10> - <TR style="height:100%"> - <TD BGCOLOR="#738ED3" VALIGN="top" HEIGHT="100%" > - <A CLASS="leftbar" HREF="cgi-bin/hgGateway"> - Genome Browser</A><HR> - <A CLASS="leftbar" HREF="cgi-bin/hgBlat"> - Blat</A><HR> - <A CLASS="leftbar" HREF="cgi-bin/hgTables"> - Table Browser</A><HR> - <A CLASS="leftbar" HREF="cgi-bin/hgNear"> - Gene Sorter</A><HR> - <A CLASS="leftbar" HREF="cgi-bin/hgPcr"> - In Silico PCR</A><HR> - <A CLASS="leftbar" HREF="cgi-bin/hgGenome"> - Genome Graphs</A><HR> - <A CLASS="leftbar" HREF="http://galaxy.psu.edu" - TARGET=_blank>Galaxy</A><HR> - <A CLASS="leftbar" HREF="cgi-bin/hgVisiGene"> - VisiGene</A><HR> - <A CLASS="leftbar" HREF="util.html"> - Utilities</A><HR> - <A CLASS="leftbar" HREF="http://hgdownload.soe.ucsc.edu/downloads.html"> - Downloads</A><HR> - <A CLASS="leftbar" HREF="goldenPath/releaseLog.html"> - Release Log</A><HR> - <A CLASS="leftbar" HREF="goldenPath/customTracks/custTracks.html"> - Custom Tracks</A><HR> - <A CLASS="leftbar" HREF="https://genome-cancer.ucsc.edu/"> - Cancer Browser</A><HR> - <A CLASS="leftbar" HREF="http://microbes.ucsc.edu/"> - Microbial Genomes</A><HR> - <A CLASS="leftbar" HREF="ENCODE/"> - ENCODE</A><HR> - <A CLASS="leftbar" HREF="Neandertal"> - Neandertal</A><HR> - <A CLASS="leftbar" HREF="mirror.html"> - Mirrors</A><HR> - <A CLASS="leftbar" HREF="training/index.html" - TARGET=_blank> - Training</A><HR> - <A CLASS="leftbar" HREF="http://genome.ucsc.edu/blog"> - Blog</A><HR> - <A CLASS="leftbar" HREF="goldenPath/credits.html"> - Credits</A><HR> - <A CLASS="leftbar" HREF="goldenPath/pubs.html"> - Publications</A><HR> - <A CLASS="leftbar" HREF="cite.html"> - Cite Us</A><HR> - <A CLASS="leftbar" HREF="license/"> - Licenses</A><HR> - <A CLASS="leftbar" HREF="https://genomics.soe.ucsc.edu/careers/" TARGET=_blank> - Jobs</A><HR> - <A CLASS="leftbar" HREF="staff.html"> - Staff</A><HR> - <A CLASS="leftbar" HREF="contacts.html"> - Contact Us</A><HR> - <BR> - <IMG SRC="images/DOT.gif" ALT="" HEIGHT=700 WIDTH=1> - </TD></TR></TABLE> - </TD></TR></TABLE> - </TD></TR></TABLE> - </TD> - - <TD VALIGN="top"> - <!--outer table is for border purposes--> - <TABLE CELLPADDING=5 BORDER=0> - <TR><TD><!--#include virtual="indexIntro.html"--></TD></TR> - <TR><TD><!--#include virtual="indexNews.html"--></TD></TR> - <TR><TD><!--#include virtual="indexInfo.html"--></TD></TR> - </TABLE> - </TD></TR></TABLE> - -</BODY></HTML> +<!DOCTYPE html> +<html> + <head> + <meta http-equiv="Content-Type" CONTENT="text/html;CHARSET=iso-8859-1"> + <meta name="description" content="UCSC Genome Browser"> + <meta name="keywords" content="genome, genome browser, human genome, genome assembly, Blat, UCSC, bioinformatics, gene prediction, SNP, SNPs, EST, mRNA, mouse genome, rat genome, chicken genome, chimp genome, dog genome, fruitfly genome, zebrafish genome, xenopus, frog genome, rhesus, opossum, danio rerio genome, drosophila, fugu, yeast, ciona, comparative genomics, human variation, hapMap"> + <title>UCSC Genome Browser Home</title> + <link href='https://fonts.googleapis.com/css?family=Oswald:700|Lato:700,700italic,300,400,400italic' rel='stylesheet' type='text/css'> + <link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/font-awesome/4.5.0/css/font-awesome.min.css"> + <link rel="stylesheet" href="../style/HGStyle.css"> + <link rel="stylesheet" href="../style/jWest.css"> + </head> + + <body> + + <!-- Banner --> + <div id="banner" class="jwBanner"> + <a class="jwAnchor" href="http://www.ucsc.edu/"> + <div class="jwUcscLogoWrapper"> + <!--#include virtual="images/ucscLogo.svg"--> + </div> + </a> + <img src="../images/ucscHelixLogo.png" class="jwBannerHelixLogo"> + <div class="jwBannerTitle"> + Genome Browser + </div> + </div> + + <!-- Menu bar / hotlinks / blue bar: --> + <!--#include virtual="cgi-bin/hgMenubar"--> + + <!-- Override nice-menu.css's menu background and fonts: --> + <link rel="stylesheet" href="../style/jWest.afterNiceMenu.css"> + + <div id="staticMain" class="jwStaticMain"> + + <!-- hgwdev warning (if applicable) --> + <!--#if expr='("$SERVER_NAME" = /hgwdev.*.ucsc.edu/ || "$SERVER_NAME" = /genome-test.*.ucsc.edu/) && "$SERVER_NAME" != /hgwdev-demo6/'--> + <div id="devWarningRow" class="jwRow"> + <div id="devWarningBox" class="jwWarningBox jwWarningBoxStatic"> + WARNING: This is the UCSC Genome Browser development site. + This website is used for testing purposes only and is not intended for general public + use. + Data and tools on this site are under development, have not been reviewed for quality, + and are subject to change at any time. + The high-quality, reviewed public site of the UCSC Genome Browser is available for use + at <a href="http://genome.ucsc.edu/">http://genome.ucsc.edu/</a>. + </div> + </div> + <!--#endif --> + + <!-- genome-preview warning (if applicable) --> + <!--#if expr='"$SERVER_NAME" = /genome-preview.*.ucsc.edu/' --> + <div id="previewWarningRow" class="jwRow"> + <div id="previewWarningBox" class="jwWarningBox jwWarningBoxStatic"> + WARNING: This is the UCSC Genome Browser preview site. + This website is a weekly mirror of our internal development server for public access. + Data and tools on this site are under development, have not been reviewed for quality, + and are subject to change at any time. + We provide this site for early access, with the warning that it is less available and + stable than our public site. + The high-quality, reviewed public site of the UCSC Genome Browser is available for use + at <a href="http://genome.ucsc.edu/">http://genome.ucsc.edu/</a>. + </div> <!-- previewWarningBox --> + </div> <!-- previewWarningRow --> + <!--#endif --> + + <div id="row1" class="jwRow"> + + <div id="pretty" class="jwColumn jwStaticLeftColumn"> + <div id="prettyBox" class="jwSection"> + <a href="cgi-bin/hgTracks"> + <img src="images/dna-163466_960_720_rotated.jpg" width=438 height=517> + </a> + </div> <!-- prettyBox --> + </div> <!-- pretty --> + + <div id="tools" class="jwColumn jwStaticRightColumn"> + <div id="toolsBox" class="jwSection"> + <div class="jwSectionTitle">Our tools</div> + <div class="jwSectionContents"> + <ul class="jwNoBullet jwLessIndent"> + <!--#include virtual="indexTools.html"--> + </ul> + <a href="util.html">More tools...</a> + <br><br> + </div> <!-- sectionContents --> + </div> <!-- toolsBox --> + </div> <!-- tools --> + + </div> <!-- row1 --> + + <div id="row2" class="jwRow"> + + <div id="aboutUs" class="jwColumn jwStaticRightColumn"> + <div id="aboutUsBox" class="jwSection"> + <div class="jwSectionTitle">Our story</div> + <div class="jwSectionContents"> + <!--#include virtual="indexStory.html"--> + </div> + </div> <!-- aboutUsBox --> + </div> <!-- aboutUs --> + + <div id="news" class="jwColumn jwStaticLeftColumn"> + <div id="newsBox" class="jwSection"> + <div class="jwSectionTitle">What's new</div> + <div class="jwSectionContents"> + <div id="newsItems"> + <!--#include virtual="indexNews.html"--> + </div> <!-- newsItems --> + <div class="jwNewsItem"> + <a href="goldenPath/newsarch.html">More news...</a> + </div> + <br> + <!-- + <a href="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en" + target=_blank>Subscribe</a> + --> + <hr> + <em>The UCSC Genome Browser is developed and maintained by the + <a href="staff.html">Genome Bioinformatics Group</a>, a cross-departmental team + within the <a href="http://genomics.ucsc.edu/">UCSC Genomics Institute</a></em>. + </div> <!-- sectionContents --> + </div> <!-- newsBox --> + </div> <!-- news --> + + </div> <!-- row2 --> + + </div> <!-- main --> + + <!--#include virtual="inc/jWestFooter.html"--> + + </body> +</html>