File Changes for braney

v335_preview2 to v335_base (2016-06-27 to 2016-07-04) v335

• src/hg/hgGene/hgGeneData/Human/hg15/otherOrgs.ra
  • lines changed 18, context: html, text, full: html, text
    19dbed83451bec7177ac6ebbbd17b161e1609c32 Wed Jun 29 12:23:18 2016 -0700
    fix up hg38 otherOrgs.ra to delete links to other species without hgGene
    
• src/hg/hgGene/hgGeneData/Human/hg16/otherOrgs.ra
  • lines changed 17, context: html, text, full: html, text
    19dbed83451bec7177ac6ebbbd17b161e1609c32 Wed Jun 29 12:23:18 2016 -0700
    fix up hg38 otherOrgs.ra to delete links to other species without hgGene
    
• src/hg/hgGene/hgGeneData/Human/hg17/otherOrgs.ra
  • lines changed 15, context: html, text, full: html, text
    19dbed83451bec7177ac6ebbbd17b161e1609c32 Wed Jun 29 12:23:18 2016 -0700
    fix up hg38 otherOrgs.ra to delete links to other species without hgGene
    
• src/hg/hgGene/hgGeneData/Human/hg18/otherOrgs.ra
  • lines changed 15, context: html, text, full: html, text
    19dbed83451bec7177ac6ebbbd17b161e1609c32 Wed Jun 29 12:23:18 2016 -0700
    fix up hg38 otherOrgs.ra to delete links to other species without hgGene
    
• src/hg/hgGene/hgGeneData/Human/hg19/otherOrgs.ra
  • lines changed 15, context: html, text, full: html, text
    19dbed83451bec7177ac6ebbbd17b161e1609c32 Wed Jun 29 12:23:18 2016 -0700
    fix up hg38 otherOrgs.ra to delete links to other species without hgGene
    
• src/hg/hgGene/hgGeneData/Human/hg38/otherOrgs.ra
  • lines changed 7, context: html, text, full: html, text
    19dbed83451bec7177ac6ebbbd17b161e1609c32 Wed Jun 29 12:23:18 2016 -0700
    fix up hg38 otherOrgs.ra to delete links to other species without hgGene
    
• src/hg/hgGene/hgGeneData/Human/otherOrgs.ra
  • lines changed 24, context: html, text, full: html, text
    bce4fe1b88cbe14c14ba8292ee15fa420cf908bb Wed Jun 29 12:24:19 2016 -0700
    delete Human otherOrgs.ra
    
• src/hg/hgTables/identifiers.c
  • lines changed 6, context: html, text, full: html, text
    d229ccd25b8ed02ab143f8cfc2e174ebd749a03b Tue Jun 28 17:37:20 2016 -0700
    deal with table names in idXref statements of the form db.table
    
• src/hg/inc/trackDb.h
  • lines changed 1, context: html, text, full: html, text
    65aee15f89102180ee10261f0da584856bac6ee4 Fri Jul 1 14:18:10 2016 -0700
    add bigChain to the list of bigBed formats in trackDb.h
    
• src/hg/makeDb/doc/hg19.txt
  • lines changed 9, context: html, text, full: html, text
    fef43d40a51eb99f7abb3f289fac9218c7c7c24e Tue Jun 28 00:52:49 2016 -0700
    redo refGene CDS Fasta alignments with hg19 multiz100way
    
• src/hg/makeDb/doc/hg38/multiz100way.txt
  • lines changed 15, context: html, text, full: html, text
    12e63280f4c2dac4dcba582d94dfdedc731f342a Mon Jun 27 15:39:13 2016 -0700
    rebuild CDS FASTA downloads for hg38 knownGene and knownCanonical
    
• src/hg/makeDb/doc/ucscGenes/hg38.ucscGenes17.sh
  • lines changed 4, context: html, text, full: html, text
    6602ea77fd2e1cf9d0b993076805f551dd735c62 Mon Jun 27 15:44:00 2016 -0700
    formatting fix in doc
    
  • lines changed 4, context: html, text, full: html, text
    113f2763842116b69b0bdb4d6acc05f006cc5dc9 Wed Jun 29 10:27:13 2016 -0700
    add isPcr gfServer for hg38 knownGene
    
• src/hg/makeDb/trackDb/human/hg38/knownGeneOld9.html
  • lines changed 17, context: html, text, full: html, text
    e2bad0b45e1e163a9f4b84fb3c76e93994e9a208 Mon Jun 27 15:36:28 2016 -0700
    Old UCSC Genes description
    
• src/hg/utils/pslToBigPsl/pslToBigPsl.c
  • lines changed 4, context: html, text, full: html, text
    10fba1d5b5154cae1299fd79f55d9d582815a207 Wed Jun 29 15:10:35 2016 -0700
    make sure CDS field is null and error out with message on protein psl