4d66c70ec97d6efbed1dac76f1b617752f8a7b00
brianlee
  Thu Jun 30 15:01:37 2016 -0700
Adding news release about CRAM file refs #17499

diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html
index 3e4cf82..b691a47 100755
--- src/hg/htdocs/indexNews.html
+++ src/hg/htdocs/indexNews.html
@@ -26,30 +26,44 @@
           <TR><TD WIDTH=10></TD>
           <TD>
           <P>
           To receive announcements of new genome 
           assembly releases, new software features, updates and 
           training seminars by email, subscribe to the
           <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en"
           TARGET=_blank>genome-announce</A> mailing list. Please see our
           <a href="http://genome.ucsc.edu/blog"
           target=_blank>blog</a> for posts about Genome Browser tools, features, projects and more.
           </p>
    
      <hr>      
     <!-- start news -->
 
+  <font color="#006666" size="4"><b>30 June 2016 - CRAM Files now supported!</b></font>
+  <p>
+  <p>
+  We are excited to announce the support of CRAM files on the Browser!
+  Read more <a href="goldenPath/newsarch.html#0630B16">here</a>.</p>
+  <p>
+  See complete details on the <a href="goldenPath/help/cram.html" target="_blank">CRAM Track Format</a>
+  page. To load an example CRAM file from the 1000 Genomes Project where reads are displayed as
+  a bar graph using the &quot;Display data as a density graph&quot; option,
+  <a href="/cgi-bin/hgTracks?db=hg19&position=chr21%3A33031597-33041570&hgct_customText=track%20type=bam%20name=%22CRAM%20Example%22%20description=%22A%201000%20Genomes%20CRAM%20file%22%20visibility=full%20bigDataUrl=ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase3/data/HG00139/exome_alignment/HG00139.mapped.ILLUMINA.bwa.GBR.exome.20121211.bam.cram%20doWiggle=1"
+  target="_blank">click here</a>.
+  <p>
+  Thanks to Jonathan Casper and Brian Raney for the implementation of this feature.</p>
+  <hr>
 
   <font color="#006666" size="4"><b>30 June 2016 - Updated Gene Tracks Available for 
   the Human (hg38) and Mouse (mm10) Assemblies</b></font>
   <p>  
   We are pleased to announce the release of an updated GENCODE Genes
   track for the Human (GRCh38/hg38) assembly.
   The GENCODE v24 gene set has 197,782 total transcripts, compared with 
   195,178 in the previous version. 
   The total number of canonical genes has increased from 49,534 to 49,948. 
   Comparing the new gene set with the previous version: 
   </p>
   <p>
   <ul>
   <li>193,647 transcripts did not change.</li>
   <li>128 transcripts were not carried forward to the new version.</li>