a1ad78bcb6927c8bea0a98e530ff8a8771cccf03 braney Wed Jun 22 14:35:37 2016 -0700 Replace the annoying cdsStartStat and cdsEndStat field descriptions in bigGenePred.as #17370 diff --git src/hg/lib/bigGenePred.as src/hg/lib/bigGenePred.as index 13f491c..9046229 100644 --- src/hg/lib/bigGenePred.as +++ src/hg/lib/bigGenePred.as @@ -1,25 +1,25 @@ table bigGenePred "bigGenePred gene models" ( string chrom; "Reference sequence chromosome or scaffold" uint chromStart; "Start position in chromosome" uint chromEnd; "End position in chromosome" string name; "Name or ID of item, ideally both human readable and unique" uint score; "Score (0-1000)" char[1] strand; "+ or - for strand" uint thickStart; "Start of where display should be thick (start codon)" uint thickEnd; "End of where display should be thick (stop codon)" uint reserved; "RGB value (use R,G,B string in input file)" int blockCount; "Number of blocks" int[blockCount] blockSizes; "Comma separated list of block sizes" int[blockCount] chromStarts; "Start positions relative to chromStart" string name2; "Alternative/human readable name" - string cdsStartStat; "enum('none','unk','incmpl','cmpl')" - string cdsEndStat; "enum('none','unk','incmpl','cmpl')" + string cdsStartStat; "Status of CDS start annotation (none, unknown, incomplete, or complete)" + string cdsEndStat; "Status of CDS end annotation (none, unknown, incomplete, or complete)" int[blockCount] exonFrames; "Exon frame {0,1,2}, or -1 if no frame for exon" string type; "Transcript type" string geneName; "Primary identifier for gene" string geneName2; "Alternative/human readable gene name" string geneType; "Gene type" )