Commits for hiram

v335_preview to v335_preview2 (2016-06-20 to 2016-06-27) v335

b9ea80d98934d4b898c64cfb3abb102ed45c2ff3 Mon Jun 20 10:53:41 2016 -0700

• Added colAng - Colobus angolensis palliatus - refs #17545
  
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/lib/gbGenome.c - lines changed 2, context: html, text, full: html, text

a0b0af5b45e9f97a3bd3c40e706b95dae4ae47dd Mon Jun 20 14:41:04 2016 -0700

• lost a line in the entry for colAng1 refs #17545
  
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 2, context: html, text, full: html, text

ac9d6872f9c6089afe0aaa4dedaf0fd5e8fe50cf Tue Jun 21 10:59:31 2016 -0700

• correct label for biosample in html refs #17425
  
  • src/hg/utils/automation/makeGenomeDb.pl - lines changed 1, context: html, text, full: html, text

d373048b44e1f8a88db5f7442d9e7c04516eb3d6 Tue Jun 21 11:12:39 2016 -0700

• adding gorGor5 to the build refs #17580
  
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text

1b22c6a82a2b28ec3a8e0023193d050a5ed74c6b Tue Jun 21 11:12:47 2016 -0700

• adding gorGor5 to the build refs #17580
  
  • src/hg/makeDb/trackDb/gorilla/gorGor5/description.html - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gorilla/gorGor5/gap.html - lines changed 37, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gorilla/gorGor5/gold.html - lines changed 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gorilla/gorGor5/trackDb.ra - lines changed 8, context: html, text, full: html, text

fe76863e06f80a5d4f967d4a0e856aec2bc74c20 Fri Jun 24 13:08:57 2016 -0700

• Added gorGor5 - Gorilla refs #17580
  
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 17, context: html, text, full: html, text

9d19e96b3998100f6aa3ce2bbe1ad9195e075c9f Fri Jun 24 13:11:48 2016 -0700

• running genbank refs #17580
  
  • src/hg/makeDb/doc/gorGor5/initialBuild.txt - lines changed 596, context: html, text, full: html, text

be5f3b3d7f1653df940b1937a5caffe21b3cf24b Fri Jun 24 17:04:09 2016 -0700

• now using new trf v4.09 for simple repeats refs #17580
  
  • src/hg/trfBig/trfBig.c - lines changed 17, context: html, text, full: html, text
  • src/hg/utils/automation/doSimpleRepeat.pl - lines changed 19, context: html, text, full: html, text

af9f6348d8c6714b66220f7c763c085a30015989 Mon Jun 27 10:01:43 2016 -0700

• v335 preview2 refs #17576
  
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text