Commits for jcasper

v335_preview to v335_preview2 (2016-06-20 to 2016-06-27) v335

058f0c5872f8ba6d7a90535d34f61f056b6b5315 Mon Jun 20 17:17:10 2016 -0700

• Adjustments to blastTabs so that mm10 hgGene links work properly, refs #15315
  
  • src/hg/hgGene/hgGeneData/C_elegans/otherOrgs.ra - lines changed 24, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/D_melanogaster/otherOrgs.ra - lines changed 24, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/Human/otherOrgs.ra - lines changed 24, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/Mouse/mm10/otherOrgs.ra - lines changed 22, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/Mouse/mm3/otherOrgs.ra - lines changed 16, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/Mouse/mm4/otherOrgs.ra - lines changed 16, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/Mouse/mm5/otherOrgs.ra - lines changed 14, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/Mouse/mm6/otherOrgs.ra - lines changed 14, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/Mouse/mm7/otherOrgs.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/Mouse/mm8/otherOrgs.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/Mouse/mm9/otherOrgs.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/Rat/otherOrgs.ra - lines changed 24, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/S_cerevisiae/otherOrgs.ra - lines changed 24, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/Zebrafish/otherOrgs.ra - lines changed 24, context: html, text, full: html, text
  • src/hg/hgGene/hgGeneData/otherOrgs.ra - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/doc/ucscGenes/mm10.ucscGenes16.csh - lines changed 3, context: html, text, full: html, text

9d8816cc89bccdd069920777ae4150cde59e8ade Wed Jun 22 14:04:52 2016 -0700

• CDS FASTA dump for mm10 knownGene version 16, refs #15315
  
  • src/hg/makeDb/doc/mm10.txt - lines changed 55, context: html, text, full: html, text

b563d3ca7893400988f7e3aad1885fa70dea7bd0 Wed Jun 22 15:11:07 2016 -0700

• Slight fix to omit path names from md5sum file, refs #15315
  
  • src/hg/makeDb/doc/mm10.txt - lines changed 1, context: html, text, full: html, text

13ae98eb7b6d5f3f37288d877d53507ce8acf7fa Fri Jun 24 10:31:05 2016 -0700

• Fixes to GWAS Catalog otto pipeline, refs #14465
  
  • src/hg/utils/otto/gwas/checkGwas.sh - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/otto/gwas/perlParser.pl - lines changed 43, context: html, text, full: html, text

54e9b135f79ca46e7d183560ff9f5c80180749e9 Fri Jun 24 11:31:04 2016 -0700

• ISCA track was getting bad timestamps and not always updating when the data files on the ftp server were changed.
  
  • src/hg/utils/otto/isca/checkISCA.sh - lines changed 3, context: html, text, full: html, text