Commits for braney

v336_preview2 to v336_base (2016-07-18 to 2016-07-25) v336

5896c6c1fe9d479aad89bd5fa9f6903193503646 Mon Jul 18 12:34:40 2016 -0700

• change refLink to hgFixed.refLink in trackDb
  
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.genbank.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer2/trackDb.ra - lines changed 1, context: html, text, full: html, text

69e65f45d0db6e87a72aa22c5aa61c3c4f6f2412 Mon Jul 18 14:33:48 2016 -0700

• fix up some problems in table browser with CRAM output #17698
  
  • src/hg/hgTables/bam.c - lines changed 19, context: html, text, full: html, text
  • src/hg/hgTables/bigWig.c - lines changed 2, context: html, text, full: html, text

f41b7312f74139ab5b5580d6767d12b456c831d7 Thu Jul 21 17:45:59 2016 -0700

• remove the canDoCoverage hg.conf variable.
  
  • src/hg/inc/hui.h - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 5, context: html, text, full: html, text