11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/blat/makefile src/blat/makefile
index be9a2da..d42f2c2 100644
--- src/blat/makefile
+++ src/blat/makefile
@@ -1,15 +1,16 @@
+kentSrc = ..
 include ../inc/common.mk
 
 L += -lm $(SOCKETLIB)
 MYLIBDIR = ../lib/$(MACHTYPE)
 MYLIBS =  $(MYLIBDIR)/jkOwnLib.a $(MYLIBDIR)/jkweb.a 
 
 O = blat.o
 
 blat: $O $(MYLIBS)
 	${CC} ${COPT} ${CFLAGS} -o ${DESTDIR}${BINDIR}/blat $O $(MYLIBS) $L
 	${STRIP} ${DESTDIR}${BINDIR}/blat${EXE}
 
 all:
 	cd ../lib && ${MAKE}
 	make