11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/cdnaAli/lib/makefile src/cdnaAli/lib/makefile
index 6c432a4..c544814 100644
--- src/cdnaAli/lib/makefile
+++ src/cdnaAli/lib/makefile
@@ -1,7 +1,8 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 
 cdnaAli.o: cdnaAli.c
 
 clean::
 	rm -f cdnaAli.o