11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/geneBounds/makefile src/hg/geneBounds/makefile
index 4ff731b..69c6036 100644
--- src/hg/geneBounds/makefile
+++ src/hg/geneBounds/makefile
@@ -1,15 +1,16 @@
+kentSrc = ../..
 include ../../inc/common.mk
 # Build all directories in makeDb 
 
 # List of directories to build
 USE_DIRS = $(DIRS)
 
 DIRS = \
 	assessLibs \
 	averagExp \
 	axtForEst \
 	bedCons \
 	checkableBorf \
 	clusterGenes \
 	clusterPsl \
 	clusterRna \