11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/hgApi/makefile src/hg/hgApi/makefile
index 0162f71..35129a1 100644
--- src/hg/hgApi/makefile
+++ src/hg/hgApi/makefile
@@ -1,14 +1,15 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 L += ${MYSQLLIBS} -lm
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
 
 A = hgApi
 
 O = $A.o
 
 include ../../inc/cgi_build_rules.mk
 
 compile: $O
 	${CC} -o $A $O ${MYLIBS} ${L}