11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/hgBatch/makefile src/hg/hgBatch/makefile
index d65c23a..1b0ff76 100644
--- src/hg/hgBatch/makefile
+++ src/hg/hgBatch/makefile
@@ -1,15 +1,16 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 
 L += $(MYSQLLIBS) -lm
 MYLIBDIR = ../../lib/$(MACHTYPE)
 MYLIBS =  $(MYLIBDIR)/jkhgap.a $(MYLIBDIR)/jkweb.a
 
 O = hgBatch.o
 
 A = hgBatch
 
 my: compile
 	mv $A ${CGI_BIN}-${USER}/$A
 
 alpha: compile