11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/hgCustom/makefile src/hg/hgCustom/makefile
index 904b91a..29b41d1 100644
--- src/hg/hgCustom/makefile
+++ src/hg/hgCustom/makefile
@@ -1,15 +1,16 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 HG_WARN=-Wall
 
 L += -lm ${MYSQLLIBS}
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a $(MYLIBDIR)/jkweb.a
 
 A = hgCustom
 
 O = $A.o
 
 include ../../inc/cgi_build_rules.mk
  
 compile: $O