11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/hgTables/makefile src/hg/hgTables/makefile
index 3973a23..0668b4a 100644
--- src/hg/hgTables/makefile
+++ src/hg/hgTables/makefile
@@ -1,15 +1,16 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 L += ${HALLIBS} ${MYSQLLIBS} -lm
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
 
 A = hgTables
 
 T = tstbug.o
 
 O = $A.o asFilter.o bam.o bedList.o bigBed.o bigWig.o \
     chromGraph.o compositeTrack.o custom.o filterFields.o \
     gffOut.o hal.o identifiers.o intersect.o correlate.o correlatePlot.o \
     joining.o longRange.o maf.o mainPage.o microarrayTables.o rangeHistogram.o schema.o pal.o \
     seqOut.o sumStats.o usage.o vcf.o wiggle.o wikiTrack.o galaxy.o great.o genomeSpace.o userRegions.o