11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/hgTracks/makefile src/hg/hgTracks/makefile
index 3eaa19e..399d126 100644
--- src/hg/hgTracks/makefile
+++ src/hg/hgTracks/makefile
@@ -1,15 +1,16 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 L += ${HALLIBS} ${MYSQLLIBS} -lm
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
 
 A = hgTracks
 RENDERA = hgRenderTracks
 
 COMMONO = adjacencyTrack.o pubsTracks.o altGraphXTrack.o bamTrack.o bedGraph.o bedTrack.o \
 	bigBedTrack.o bigWarn.o bigWigTrack.o \
 	chainTrack.o cgapSageTrack.o chromGraphTrack.o config.o container.o contigTrack.o \
 	coverageTrack.o cytoBandTrack.o cutterTrack.o \
         expRatioTracks.o factorSource.o hgTracks.o \
 	gencodeTracks.o goldTrack.o gtexTracks.o gvfTrack.o \