11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/js/makefile src/hg/js/makefile
index 1207f1a..d370838 100644
--- src/hg/js/makefile
+++ src/hg/js/makefile
@@ -1,15 +1,16 @@
+kentSrc = ../..
 include ../../inc/common.mk
 include install.mk
 
 SUBDIRS= external model react
 include subdirs.mk
 
 # UCSC js files must pass jshint
 UCSC_JS_FILES=ajax.js alleles.js autocomplete.js edwPersona.js \
     hgCustom.js hgGateway.js hgHubConnect.js hgTracks.js \
     hgVarAnnogrator.js hui.js jsHelper.js utils.js ddcl.js subCfg.js \
     encodeProject.js encodeDataSummary.js encodeDataMatrix.js encodeChipMatrix.js encodeMatrix.js d3.dendrograms.js
 
 # STATIC files must pass jshint
 STATIC_FILES=staticDoc.js dbDbTaxonomy.js