11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/lib/customAdjacency.c src/hg/lib/customAdjacency.c
index bcbd0a4..1dbb6a3 100644
--- src/hg/lib/customAdjacency.c
+++ src/hg/lib/customAdjacency.c
@@ -15,33 +15,31 @@
 #include "genePred.h"
 #include "trackDb.h"
 #include "hgConfig.h"
 #include "hdb.h"
 #include "hui.h"
 #include "customTrack.h"
 #include "customPp.h"
 #include "customFactory.h"
 #include "trashDir.h"
 #include "jsHelper.h"
 #include "encode/encodePeak.h"
 #include "udc.h"
 #include "bbiFile.h"
 #include "bigWig.h"
 #include "bigBed.h"
-#ifdef USE_BAM
 #include "hgBam.h"
-#endif//def USE_BAM
 #include "vcf.h"
 #include "makeItemsItem.h"
 #include "bedDetail.h"
 #include "pgSnp.h"
 #include "regexHelper.h"
 #include "chromInfo.h"
 #include "adjacency.h"
 
 char *ctGenomeOrCurrent(struct customTrack *ct);
 /*** adjacency Factory - allow adjacency(personal genome SNP) custom tracks ***/
 
 static boolean rowIsAdjacency (char **row, char *db, char *type)
 /* return TRUE if row looks like a adjacency row */
 {
 return TRUE;