11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/makeSeqs/makefile src/hg/makeSeqs/makefile
index d7f72dd..c8826cd 100644
--- src/hg/makeSeqs/makefile
+++ src/hg/makeSeqs/makefile
@@ -1,15 +1,16 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 JKSRCDIR = ../..
 JKLIBDIR = $(JKSRCDIR)/lib/$(MACHTYPE)
 
 L += $(MYSQLLIBS) -lm 
 MYLIBS =  $(JKLIBDIR)/jkhgap.a $(JKLIBDIR)/jkweb.a
 
 O = makeSeqs.o
 
 makeSeqs: $O 
 	${CC} ${COPT} ${CFLAGS} $O $(MYLIBS) $(L) 
 	mv ${AOUT} makeSeqs
 	${STRIP} makeSeqs${EXE}
 	chmod a+rx makeSeqs