11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/phyloGif/makefile src/hg/phyloGif/makefile
index 5a6a64f..58c1849 100644
--- src/hg/phyloGif/makefile
+++ src/hg/phyloGif/makefile
@@ -1,15 +1,16 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 L += $(MYSQLLIBS) -lm
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  $(MYLIBDIR)/jkhgap.a $(MYLIBDIR)/jkweb.a
 
 A = phyloGif
 
 O = ${A}.o
 
 include ../../inc/cgi_build_rules.mk
 
 my:: compile
 	if [ -d "${BINDIR}" ] && [ ! ${CGI_BIN}-${USER}/$A -ef ${DESTDIR}${BINDIR}/$A ] ; then \
 	    cp ${CGI_BIN}-${USER}/$A ${DESTDIR}${BINDIR}/; \