11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/protein/makefile src/hg/protein/makefile
index bfcb7e9..e732425 100644
--- src/hg/protein/makefile
+++ src/hg/protein/makefile
@@ -1,15 +1,16 @@
+kentSrc = ../..
 # Build all directories in utils
 
 include ../../inc/common.mk
 
 DIRS = \
 	blastRecipBest \
 	gadPos \
 	hmmPfamToTab \
 	kgAliasM \
 	kgAliasP \
 	kgAliasKgXref \
 	kgAliasRefseq \
 	kgProtAlias \
 	kgProtAliasNCBI \
 	kgBestMrna2 \