11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/pslOneTwo/makefile src/hg/pslOneTwo/makefile
index 9548056..5ce5207 100644
--- src/hg/pslOneTwo/makefile
+++ src/hg/pslOneTwo/makefile
@@ -1,15 +1,16 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 L += -lm
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
 CFLAGS= -ggdb
 
 targets: chainOneTwo pslOneTwo
 O = pslOneTwo.o
 
 chainOneTwo: ${MYLIBS} chainOneTwo.o 
 	${CC} ${COPT} -o ${BINDIR}/chainOneTwo chainOneTwo.o ${MYLIBS} $L
 
 pslOneTwo: $O ${MYLIBS}
 	${CC} ${COPT} -o ${BINDIR}/pslOneTwo $O ${MYLIBS} $L