11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/pslToFa/makefile src/hg/pslToFa/makefile
index b7ce1e4..f8591bb 100644
--- src/hg/pslToFa/makefile
+++ src/hg/pslToFa/makefile
@@ -1,15 +1,16 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 L += ${MYSQLLIBS} -lm
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  $(MYLIBDIR)/jkhgap.a $(MYLIBDIR)/jkweb.a
 
 O = pslToFa.o
 CFLAGS=-ggdb
 
 pslToFa: $O $(MYLIBS)
 	${CC} ${COPT} ${CFLAGS} -o ${BINDIR}/pslToFa $O $(MYLIBS) $L
 #	${STRIP} ${BINDIR}/pslToFa${EXE}
 
 clean::
 	rm -f ${O}