11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/qaPushQ/makefile src/hg/qaPushQ/makefile
index fbed420..1a003a1 100644
--- src/hg/qaPushQ/makefile
+++ src/hg/qaPushQ/makefile
@@ -1,15 +1,16 @@
+kentSrc = ../..
 
 include ../../inc/common.mk
 
 #make COPT= alpha  
 #(to disable gcc optimization which is messing up RL right now)
 
 A = qaPushQ
 
 L += $(MYSQLLIBS) -lm -lcrypt
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS = $(MYLIBDIR)/jkhgap.a $(MYLIBDIR)/jkweb.a 
 
 O = $A.o
 
 include ../../inc/cgi_build_rules.mk