11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/txCds/makefile src/hg/txCds/makefile
index 7f83a7d..17067a2 100644
--- src/hg/txCds/makefile
+++ src/hg/txCds/makefile
@@ -1,15 +1,16 @@
+kentSrc = ../..
 # Build txGraph source
 include ../../inc/common.mk
 
 # List of directories to build
 DIRS = \
     txCdsBadBed \
     txCdsCluster \
     txCdsEvFromBed \
     txCdsEvFromBorf \
     txCdsEvFromProtein \
     txCdsEvFromRna \
     txCdsGoodBed \
     txCdsOrfInfo \
     txCdsOrtho \
     txCdsPick \