11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/hg/visiGene/makefile src/hg/visiGene/makefile
index f219bff..d8c4c6e 100644
--- src/hg/visiGene/makefile
+++ src/hg/visiGene/makefile
@@ -1,15 +1,16 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 # List of directories to build
 USE_DIRS = $(DIRS)
 
 DIRS = \
     microscope \
     microscopeLoad 
 
 # Needs work to compile
 #	vgPrepImage \
 
 all: $(USE_DIRS:%=%.all)
 
 %.all: