11e45667d4e291b3038ccda729a1cdf5bcaf004a braney Mon Jul 11 15:46:54 2016 -0700 incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX defines, modify a bunch of makefiles to include kentSrc variable pointing to top of the tree. diff --git src/htslib/test/ce.fa.fai src/htslib/test/ce.fa.fai new file mode 100644 index 0000000..2ad2e7f --- /dev/null +++ src/htslib/test/ce.fa.fai @@ -0,0 +1,7 @@ +CHROMOSOME_I 1009800 14 50 51 +CHROMOSOME_II 5000 1030025 50 51 +CHROMOSOME_III 5000 1035141 50 51 +CHROMOSOME_IV 5000 1040256 50 51 +CHROMOSOME_V 5000 1045370 50 51 +CHROMOSOME_X 5000 1050484 50 51 +CHROMOSOME_MtDNA 5000 1055602 50 51