11e45667d4e291b3038ccda729a1cdf5bcaf004a braney Mon Jul 11 15:46:54 2016 -0700 incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX defines, modify a bunch of makefiles to include kentSrc variable pointing to top of the tree. diff --git src/htslib/test/faidx.fa src/htslib/test/faidx.fa new file mode 100644 index 0000000..1a72d11 --- /dev/null +++ src/htslib/test/faidx.fa @@ -0,0 +1,17 @@ +> +ATGC +>trailingblank1 +AAATTTGGGCCC +TTTGGGCCCAAA +GGGCCCAAA + +>trailingblank2 with last dna line the same length +AAATTTGGGCCCAAATTTGGGCCC +TTTGGGCCCAAATTTGGGCCCAAA +GGGCCCAAATTTGGGCCCAAATTT + +> foo +TGCATG +CA +> bar description +TTTTAAAA