11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/isPcr/gfPcr/makefile src/isPcr/gfPcr/makefile
index ac4dc7f..c8184cf 100644
--- src/isPcr/gfPcr/makefile
+++ src/isPcr/gfPcr/makefile
@@ -1,14 +1,15 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 L += -lm $(SOCKETLIB)
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkOwnLib.a ${MYLIBDIR}/jkweb.a
 
 O = gfPcr.o
 
 gfPcr: $O ${MYLIBS}
 	${CC} ${COPT} -o ${DESTDIR}${BINDIR}/gfPcr $O ${MYLIBS} $L
 #	${STRIP} ${DESTDIR}${BINDIR}/gfPcr${EXE}
 
 clean:
 	rm -f $O