11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/lib/makefile src/lib/makefile
index 5c5cfad..1988acf 100644
--- src/lib/makefile
+++ src/lib/makefile
@@ -1,15 +1,16 @@
+kentSrc = ..
 include ../inc/localEnvironment.mk
 include ../inc/common.mk
 
 O = aliType.o annoAssembly.o annoFilter.o annoFormatter.o annoFormatTab.o \
     annoGrator.o annoGrateWig.o annoGratorQuery.o annoOption.o annoRow.o \
     annoStreamer.o annoStreamBigBed.o annoStreamBigWig.o annoStreamTab.o annoStreamTabix.o annoStreamVcf.o \
     apacheLog.o asParse.o aveStats.o axt.o axtAffine.o bamFile.o base64.o \
     basicBed.o bbiRead.o bbiWrite.o bedTabix.o bigBed.o binRange.o bits.o \
     blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o \
     bwgCreate.o bwgQuery.o bwgValsOnChrom.o \
     cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o \
     cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o \
     dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o \
     dnautil.o dtdParse.o dyOut.o dystring.o elmTree.o \
     emblParse.o errCatch.o errAbort.o \