11e45667d4e291b3038ccda729a1cdf5bcaf004a braney Mon Jul 11 15:46:54 2016 -0700 incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX defines, modify a bunch of makefiles to include kentSrc variable pointing to top of the tree. diff --git src/lib/tests/makefile src/lib/tests/makefile index 88e81c4..5530357 100644 --- src/lib/tests/makefile +++ src/lib/tests/makefile @@ -1,15 +1,16 @@ +kentSrc = ../.. include ../../inc/common.mk ifeq (${USE_TABIX},1) TABIX_TESTS=tabixTest vcfTest else TABIX_TESTS= endif MYLIBDIR = ../../lib/${MACHTYPE} MYLIBS = ${MYLIBDIR}/jkweb.a BIN_DIR = bin/${MACHTYPE} test: errCatchTest htmlPageTest htmlExpandUrlTest pipelineTests dyStringTest \ mimeTests base64Tests quotedPTests safeTest hashTest fetchUrlTest gff3Test \ ${TABIX_TESTS} hacTreeTest testSumDoubles