11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/lib/tests/tabixFetch.c src/lib/tests/tabixFetch.c
index e3104e2..1e61411 100644
--- src/lib/tests/tabixFetch.c
+++ src/lib/tests/tabixFetch.c
@@ -1,24 +1,23 @@
 /* tabixFetch - Test lineFileTabixMayOpen and lineFileSetTabixRegion (compare with cmd line tabix output). */
 
 /* Copyright (C) 2011 The Regents of the University of California 
  * See README in this or parent directory for licensing information. */
 #include "common.h"
 #include "linefile.h"
 #include "options.h"
 
-#ifdef USE_TABIX
 
 #include "sqlNum.h"
 #include "udc.h"
 #include "knetUdc.h"
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
 
   "tabixFetch - Test lineFileTabixMayOpen and lineFileSetTabixRegion (compare\n"
   "             with command-line tabix output)\n"
 
   "usage:\n"
   "   tabixFetch fileOrUrl chrom:start-end\n"
@@ -94,24 +93,15 @@
 	printf("*** No lines returned from query on %s\n", position);
     }
 lineFileClose(&lf);
 }
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 optionInit(&argc, argv, options);
 if (argc != 3)
     usage();
 tabixFetch(argv[1], argv[2]);
 return 0;
 }
 
-#else // no USE_TABIX
-int main(int argc, char *argv[])
-/* Process command line. */
-{
-errAbort(COMPILE_WITH_TABIX, "tabixFetch");
-return 1;
-}
-
-#endif // no USE_TABIX