11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/oneShot/clusterClone/makefile src/oneShot/clusterClone/makefile
index 36057a3..2caf983 100644
--- src/oneShot/clusterClone/makefile
+++ src/oneShot/clusterClone/makefile
@@ -1,15 +1,16 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 L=-lm
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
 
 O = clusterClone.o
 A = clusterClone
 
 ${A}: $O ${MYLIBS}
 	${CC} ${COPT} -o ${BINDIR}/${A} $O ${MYLIBS} $L
 	${STRIP} ${BINDIR}/${A}${EXE}
 
 clean:
 	rm -f $O