11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/oneShot/cntGlue/makefile src/oneShot/cntGlue/makefile
index e25015d..3c86d4c 100644
--- src/oneShot/cntGlue/makefile
+++ src/oneShot/cntGlue/makefile
@@ -1,10 +1,11 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 
 O =  cntGlue.o
 
 ${BINDIR}/cntGlue: $(O)  
 	${CC} ${COPT} ${CFLAGS} -o ${BINDIR}/cntGlue $O ../../lib/$(MACHTYPE)/jkweb.a ${L}
 
 clean::
 	rm -f ${O}