11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/oneShot/onePassBedToBigBed/makefile src/oneShot/onePassBedToBigBed/makefile
index 4e69ce8..fbffe3e 100644
--- src/oneShot/onePassBedToBigBed/makefile
+++ src/oneShot/onePassBedToBigBed/makefile
@@ -1,15 +1,16 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 L += -lm ${SOCKETLIB}
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkweb.a
 
 A = onePassBedToBigBed
 O = onePassBedToBigBed.o
 
 onePassBedToBigBed: $O ${MYLIBS}
 	@${MKDIR} "${DESTDIR}${BINDIR}"
 	${CC} ${COPT} ${CFLAGS} -o ${DESTDIR}${BINDIR}/${A}${EXE} $O ${MYLIBS} ${L}
 	${STRIP} ${DESTDIR}${BINDIR}/${A}${EXE}
 
 compile:: ${A}.c