11e45667d4e291b3038ccda729a1cdf5bcaf004a braney Mon Jul 11 15:46:54 2016 -0700 incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX defines, modify a bunch of makefiles to include kentSrc variable pointing to top of the tree. diff --git src/oneShot/passHi/makefile src/oneShot/passHi/makefile index 3991773..7ff171a 100644 --- src/oneShot/passHi/makefile +++ src/oneShot/passHi/makefile @@ -1,10 +1,11 @@ +kentSrc = ../.. include ../../inc/common.mk O = passHi.o ${BINDIR}/passHi: $(O) ${CC} ${COPT} ${CFLAGS} -o ${BINDIR}/passHi $O ../../lib/$(MACHTYPE)/jkweb.a ${L} clean:: rm -f ${O}