11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/parasol/gensub2/makefile src/parasol/gensub2/makefile
index f6db655..f627d33 100644
--- src/parasol/gensub2/makefile
+++ src/parasol/gensub2/makefile
@@ -1,15 +1,16 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 L += -lm
 MYLIBDIR = ../../lib/$(MACHTYPE)
 MYLIBS =  $(MYLIBDIR)/jkweb.a
 
 O = gensub2.o
 
 gensub2: $O $(MYLIBS)
 	${MKDIR} ../bin
 	${CC} ${COPT} ${CFLAGS} -o ../bin/gensub2 $O $(MYLIBS) $L
 	${STRIP} ../bin/gensub2${EXE}
 
 clean::
 	rm -f ${O}