11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/parasol/paraHub/makefile src/parasol/paraHub/makefile
index 4485e03..fd836f2 100644
--- src/parasol/paraHub/makefile
+++ src/parasol/paraHub/makefile
@@ -1,9 +1,10 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 O = paraHub.o spoke.o heartbeat.o queue.o sockSuck.o
 
 paraHub: $(O)
 	${CC} ${COPT} ${CFLAGS} -ggdb -o ../bin/paraHub $O ../lib/$(MACHTYPE)/paralib.a ../../lib/$(MACHTYPE)/jkweb.a -lpthread $L
 
 clean::
 	rm -f ../bin/paraHub $O