11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/parasol/paraHubStop/makefile src/parasol/paraHubStop/makefile
index e4e1b4e..e91e104 100644
--- src/parasol/paraHubStop/makefile
+++ src/parasol/paraHubStop/makefile
@@ -1,13 +1,14 @@
+kentSrc = ../..
 include ../../inc/common.mk
 L += -lm 
 MYLIBDIR = ../../lib/$(MACHTYPE)
 MYLIBS =  $(MYLIBDIR)/jkweb.a
 
 O = paraHubStop.o
 
 paraHubStop: $O $(MYLIBS)
 	${CC} ${COPT} ${CFLAGS} -o ../bin/paraHubStop $O ../lib/$(MACHTYPE)/paralib.a ../../lib/$(MACHTYPE)/jkweb.a ${L}
 	${STRIP} ../bin/paraHubStop${EXE}
 
 clean::
 	rm -f ${O}