11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/test/makefile src/test/makefile
index 9a5c961..ff673ae 100644
--- src/test/makefile
+++ src/test/makefile
@@ -1,15 +1,16 @@
+kentSrc = ..
 include ../inc/common.mk
 
 ../cgi-bin/test.cgi: ../lib/$(MACHTYPE)/jkweb.a test.c
 	${CC} ${COPT} ${CFLAGS} -I../inc test.c ../lib/$(MACHTYPE)/jkweb.a ${L} -lm
 	chmod a+x ${AOUT}
 	mv ${AOUT} ../cgi-bin/test.cgi
 
 MYLIBDIR = ../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
 
 testRangeTree: ${MYLIBS} testRangeTree.c
 	${CC} ${COPT} ${CFLAGS} -I../inc -I../hg/inc testRangeTree.c ${MYLIBS} ${L} -lm -o testRangeTree
 	chmod a+x testRangeTree
 	./testRangeTree -verbose=0
 	hexdump -f out/testRangeTree.fmt out/testRangeTree.out > out/testRangeTree.hexdump2