11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/utils/bdfToGem/makefile src/utils/bdfToGem/makefile
index 8d2e241..bd4538d 100644
--- src/utils/bdfToGem/makefile
+++ src/utils/bdfToGem/makefile
@@ -1,15 +1,16 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 L += -lm ${MYSQLLIBS}
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS = ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a 
 
 XINC=-I../../lib
 
 O = bdfToGem.o
 
 A = bdfToGem
 
 all::	${A} mgTinyFont.c mgSmallFont.c mgMediumFont.c mgLargeFont.c \
 		mgHugeFont.c