11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/utils/ccCpLock/makefile src/utils/ccCpLock/makefile
index 6856487..2e4789e 100644
--- src/utils/ccCpLock/makefile
+++ src/utils/ccCpLock/makefile
@@ -1,12 +1,13 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 
 O = ccCp.o 
 
 ccCp: $O
 	${CC} ${COPT} ${CFLAGS} -o ${BINDIR}/ccCp $O ../../lib/$(MACHTYPE)/jkweb.a ${L} ${L}
 
 #	${CC} ${COPT} ${CFLAGS} -o /projects/compbio/experiments/hg/bin/$(MACHTYPE)/ccCp $O ../../lib/$(MACHTYPE)/jkweb.a ${L} ${L}
 
 clean::
 	rm -f ${O}