11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/utils/est2genomeToPsl/makefile src/utils/est2genomeToPsl/makefile
index 0fb0a3d..8052bc9 100644
--- src/utils/est2genomeToPsl/makefile
+++ src/utils/est2genomeToPsl/makefile
@@ -1,15 +1,16 @@
+kentSrc = ../..
 include ../../inc/common.mk
 L += -lm
 MYLIBDIR = ../../lib/$(MACHTYPE)
 MYLIBS =  $(MYLIBDIR)/jkhgap.a $(MYLIBDIR)/jkweb.a
 
 O = est2genomeToPsl.o
 
 est2genomeToPsl: $O $(MYLIBS)
 	${CC} ${COPT} ${CFLAGS} -o est2genomeToPsl $O $(MYLIBS) $L
 	${MKDIR} ${BINDIR}
 	cp -f est2genomeToPsl ${BINDIR}
 	${STRIP} ${BINDIR}/est2genomeToPsl${EXE}
 
 test::
 	cd tests && ${MAKE} test