11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/utils/geneStarts/makefile src/utils/geneStarts/makefile
index 04645fb..5a164a1 100644
--- src/utils/geneStarts/makefile
+++ src/utils/geneStarts/makefile
@@ -1,15 +1,16 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 
 O = geneStarts.o 
 
 L += $(MYSQLLIBS) -lm 
 MYLIBDIR = /cse/guests/kent/src/lib/$(MACHTYPE)
 MYLIBS =  $(MYLIBDIR)/jkweb.a
 
 
 geneStarts: $(O)
 	${CC} ${COPT} ${CFLAGS} -o geneStarts $O $(MYLIBS) $L
 
 clean::
 	rm -f ${O}