11e45667d4e291b3038ccda729a1cdf5bcaf004a
braney
  Mon Jul 11 15:46:54 2016 -0700
incorporate htslib in kent src, remove USE_BAM, USE_SAMTABIX, USE_TABIX
defines, modify a bunch of makefiles to include kentSrc variable
pointing to top of the tree.

diff --git src/ai/paraFlow/makefile src/ai/paraFlow/makefile
index ffa3295..f079486 100644
--- src/ai/paraFlow/makefile
+++ src/ai/paraFlow/makefile
@@ -1,19 +1,20 @@
+kentSrc = ../..
 include ../../inc/common.mk
 
 all:
 	cd compiler && ${MAKE}
 	cd runtime && ${MAKE}
 	cd testProg && ${MAKE}
 
 clean:
 	rm -f */*.o
 	cd testProg && ${MAKE} clean
 
 test:
 	cd testProg && ${MAKE}
 
 q:
 	cd testProg && ${MAKE} q
 
 quickTest:
 	cd testProg && ${MAKE} quickTest